About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23191-
Paelopatides23192TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides23193PINSTRIPE, ISOFORM A
Paelopatides23197ZGC:195170
Paelopatides23198RETROTRANSPOSON
Paelopatides23199PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides23200INNER MEMBRANE TRANSPORTER YGJI-RELATED
Paelopatides23201SPERMIDINE/SPERMINE SYNTHASE
Paelopatides23202PROTEIN CBG26694
Paelopatides23203EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
Paelopatides23204UBIQUITIN
Paelopatides2320537S RIBOSOMAL PROTEIN S22
Paelopatides23206SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides23207ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23208-
Paelopatides23209ENDONUCLEASE
Paelopatides23210-
Paelopatides23211ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23212RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides23213ENDONUCLEASE-RELATED
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