About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36260GLUTATHIONE S-TRANSFERASE
Paelopatides36261AMYLOID PROTEIN-BINDING PROTEIN 2
Paelopatides36262-
Paelopatides36263EXPRESSED PROTEIN
Paelopatides36264TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides36265FIBRILLIN-RELATED
Paelopatides36266-
Paelopatides36267FIBRILLIN-RELATED
Paelopatides36268ALPHA-TECTORIN-RELATED
Paelopatides36269-
Paelopatides3627026S PROTEASOME REGULATORY SUBUNIT
Paelopatides36271REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36272G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides36273EIF4G DOMAIN PROTEIN
Paelopatides36274LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72
Paelopatides36275PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides36276PROTEIN SIDEKICK
Paelopatides36277CYTOSOLIC CARBOXYPEPTIDASE
Paelopatides36278-
Paelopatides36279DED DOMAIN-CONTAINING PROTEIN
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