About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36219PROTEIN CBG26694
Paelopatides36220-
Paelopatides36221CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides36222MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Paelopatides36223BONUS, ISOFORM C-RELATED
Paelopatides36224ACYL-COA DEHYDROGENASE
Paelopatides36225MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Paelopatides36226YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1
Paelopatides36227-
Paelopatides36228RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Paelopatides36229VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Paelopatides36230VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Paelopatides36231VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Paelopatides36232BONUS, ISOFORM C-RELATED
Paelopatides36233HEAT SHOCK PROTEIN HSP-12.2-RELATED
Paelopatides36234ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides36235CORTACTIN AND DREBRIN
Paelopatides36236ARM REPEAT SUPERFAMILY PROTEIN
Paelopatides36237ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides36238EPM2A-INTERACTING PROTEIN 1
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