Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_11851-0.12 | |
| Bpl_scaf_11851-0.2 | PUTATIVE-RELATED |
| Bpl_scaf_11851-0.7 | ZGC:195170 |
| Bpl_scaf_11851-1.10 | EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED |
| Bpl_scaf_11851-1.11 | EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED |
| Bpl_scaf_11851-1.14 | SERINE/THREONINE PROTEIN KINASE |
| Bpl_scaf_11851-1.32 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| Bpl_scaf_11851-1.33 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22 |
| Bpl_scaf_11851-1.7 | |
| Bpl_scaf_11851-2.11 | PROTEIN FAM78A |
| Bpl_scaf_11851-2.4 | UNCHARACTERIZED |
| Bpl_scaf_11851-3.6 | DOUBLECORTIN DOMAIN CONTAINING 2 |
| Bpl_scaf_11851-3.7 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_11851-4.5 | |
| Bpl_scaf_11851-4.8 | |
| Bpl_scaf_11851-4.9 | |
| Bpl_scaf_11860-0.10 | LITHOSTATHINE |
| Bpl_scaf_11860-0.11 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_11860-0.6 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_11871-0.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_1188-0.0 | |
| Bpl_scaf_1188-0.5 | |
| Bpl_scaf_1188-0.7 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_1188-0.9 | ZGC:195170 |
| Bpl_scaf_11883-0.4 | |
| Bpl_scaf_11897-0.1 | |
| Bpl_scaf_11912-0.2 | |
| Bpl_scaf_1193-0.1 | |
| Bpl_scaf_1193-0.2 | |
| Bpl_scaf_1193-0.3 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_11932-0.8 | NEPHRIN |
| Bpl_scaf_11933-0.3 | TGF-BETA FAMILY |
| Bpl_scaf_11933-1.4 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 299 |
| Bpl_scaf_11933-2.0 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_11933-2.12 | POTE ANKYRIN DOMAIN |
| Bpl_scaf_11933-2.6 | L-GULONOLACTONE OXIDASE |
| Bpl_scaf_11933-2.8 | AGAP007547-PA |
| Bpl_scaf_11933-3.12 | |
| Bpl_scaf_11933-3.6 | L-GULONOLACTONE OXIDASE |
| Bpl_scaf_11933-4.10 | |
| Bpl_scaf_11933-4.12 | EPSIN/ENT-RELATED |
| Bpl_scaf_11933-4.5 | |
| Bpl_scaf_11941-0.7 | PREFOLDIN SUBUNIT 1-RELATED |
| Bpl_scaf_11942-0.11 | LIPASE |
| Bpl_scaf_11942-0.8 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_11942-1.11 | LD18447P |
| Bpl_scaf_11942-1.13 | VACUOLAR PROTEIN SORTING 26 RELATED |
| Bpl_scaf_11942-2.13 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
| Bpl_scaf_11942-2.15 | |
| Bpl_scaf_11942-2.20 | NUCLEAR HORMONE RECEPTOR |
