About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original description

(Southward et al., 1991  Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021152.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021153.1HEPARAN SULFATE SULFOTRANSFERASE
ENSZWYP00000021154.1
ENSZWYP00000021155.1LUNG SEVEN TRANSMEMBRANE RECEPTOR
ENSZWYP00000021156.1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
ENSZWYP00000021157.1ATP-DEPENDENT RNA HELICASE DBP3
ENSZWYP00000021158.1
ENSZWYP00000021159.1STEP II SPLICING FACTOR SLU7
ENSZWYP00000021160.1
ENSZWYP00000021161.1CHITIN BINDING PERITROPHIN-A
ENSZWYP00000021162.1ADDITIONAL SEX COMBS LIKE PROTEIN ASXL
ENSZWYP00000021163.1CELL CYCLE CHECKPOINT PROTEIN RAD17
ENSZWYP00000021164.1
ENSZWYP00000021165.1COILED-COIL DOMAIN-CONTAINING PROTEIN 154
ENSZWYP00000021166.1PROGRAMMED CELL DEATH 4
ENSZWYP00000021167.1CHITIN BINDING PERITROPHIN-A
ENSZWYP00000021168.1PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
ENSZWYP00000021169.1SWIM-TYPE DOMAIN-CONTAINING PROTEIN
ENSZWYP00000021170.1
ENSZWYP00000021171.1
ENSZWYP00000021172.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000021173.1
ENSZWYP00000021174.1COILED-COIL DOMAIN-CONTAINING PROTEIN 154
ENSZWYP00000021175.1OXIDASE/PEROXIDASE
ENSZWYP00000021176.1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
ENSZWYP00000021177.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
ENSZWYP00000021178.1
ENSZWYP00000021179.1RALA BINDING PROTEIN 1 RALBP1
ENSZWYP00000021180.1PROGRAMMED CELL DEATH 4
ENSZWYP00000021181.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000021182.1
ENSZWYP00000021183.1
ENSZWYP00000021184.1PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
ENSZWYP00000021185.1COILED-COIL DOMAIN-CONTAINING PROTEIN 154
ENSZWYP00000021186.1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
ENSZWYP00000021187.1PROGRAMMED CELL DEATH 4
ENSZWYP00000021188.1LIPASE MATURATION FACTOR
ENSZWYP00000021189.1
ENSZWYP00000021190.1RALA BINDING PROTEIN 1 RALBP1
ENSZWYP00000021191.1
ENSZWYP00000021192.1DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX
ENSZWYP00000021193.1CDK5 AND ABL1 ENZYME SUBSTRATE 1
ENSZWYP00000021194.1NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B
ENSZWYP00000021195.1
ENSZWYP00000021196.1
ENSZWYP00000021197.1ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1
ENSZWYP00000021198.1RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
ENSZWYP00000021199.1CDK5 AND ABL1 ENZYME SUBSTRATE 1
ENSZWYP00000021200.1LEUCOKININ RECEPTOR-RELATED
ENSZWYP00000021201.1ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN
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