Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)
Lamellibrachia columna Southward, 1991
(Southward et al., 1991 Kobayashi et al., 2015)
Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.
The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality
The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia columna | Annelida | - | Cold seep | 810-1,870 | cold seeps off the east coast of the North Island of New Zealand | 53616 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
---|---|---|---|---|---|---|---|---|---|---|---|
wsLamColu1.1 | 879.7Mb | Chromosome | 2023 | CAVLEN01 | WELLCOME SANGER INSTITUTE | PRJEB68353 | 97.30 | 472.9/472.5 | 40.5 | - | 32,318 |
Gene ID | Description |
---|---|
ENSZWYP00000021152.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
ENSZWYP00000021153.1 | HEPARAN SULFATE SULFOTRANSFERASE |
ENSZWYP00000021154.1 | |
ENSZWYP00000021155.1 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
ENSZWYP00000021156.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
ENSZWYP00000021157.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
ENSZWYP00000021158.1 | |
ENSZWYP00000021159.1 | STEP II SPLICING FACTOR SLU7 |
ENSZWYP00000021160.1 | |
ENSZWYP00000021161.1 | CHITIN BINDING PERITROPHIN-A |
ENSZWYP00000021162.1 | ADDITIONAL SEX COMBS LIKE PROTEIN ASXL |
ENSZWYP00000021163.1 | CELL CYCLE CHECKPOINT PROTEIN RAD17 |
ENSZWYP00000021164.1 | |
ENSZWYP00000021165.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 154 |
ENSZWYP00000021166.1 | PROGRAMMED CELL DEATH 4 |
ENSZWYP00000021167.1 | CHITIN BINDING PERITROPHIN-A |
ENSZWYP00000021168.1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
ENSZWYP00000021169.1 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
ENSZWYP00000021170.1 | |
ENSZWYP00000021171.1 | |
ENSZWYP00000021172.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
ENSZWYP00000021173.1 | |
ENSZWYP00000021174.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 154 |
ENSZWYP00000021175.1 | OXIDASE/PEROXIDASE |
ENSZWYP00000021176.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
ENSZWYP00000021177.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
ENSZWYP00000021178.1 | |
ENSZWYP00000021179.1 | RALA BINDING PROTEIN 1 RALBP1 |
ENSZWYP00000021180.1 | PROGRAMMED CELL DEATH 4 |
ENSZWYP00000021181.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
ENSZWYP00000021182.1 | |
ENSZWYP00000021183.1 | |
ENSZWYP00000021184.1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
ENSZWYP00000021185.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 154 |
ENSZWYP00000021186.1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
ENSZWYP00000021187.1 | PROGRAMMED CELL DEATH 4 |
ENSZWYP00000021188.1 | LIPASE MATURATION FACTOR |
ENSZWYP00000021189.1 | |
ENSZWYP00000021190.1 | RALA BINDING PROTEIN 1 RALBP1 |
ENSZWYP00000021191.1 | |
ENSZWYP00000021192.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
ENSZWYP00000021193.1 | CDK5 AND ABL1 ENZYME SUBSTRATE 1 |
ENSZWYP00000021194.1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B |
ENSZWYP00000021195.1 | |
ENSZWYP00000021196.1 | |
ENSZWYP00000021197.1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1 |
ENSZWYP00000021198.1 | RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED |
ENSZWYP00000021199.1 | CDK5 AND ABL1 ENZYME SUBSTRATE 1 |
ENSZWYP00000021200.1 | LEUCOKININ RECEPTOR-RELATED |
ENSZWYP00000021201.1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |