About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020902.1GOLGIN- RELATED
ENSZWYP00000020903.1LD33804P
ENSZWYP00000020904.1CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED
ENSZWYP00000020905.1GALACTOCEREBROSIDASE
ENSZWYP00000020906.1PHOSPHATIDYLINOSITOL GLYCAN-RELATED
ENSZWYP00000020907.1
ENSZWYP00000020908.1ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2
ENSZWYP00000020909.1
ENSZWYP00000020910.1NEUROTRANSMITTER GATED ION CHANNEL
ENSZWYP00000020911.1
ENSZWYP00000020912.1
ENSZWYP00000020913.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
ENSZWYP00000020914.1GOLGIN- RELATED
ENSZWYP00000020915.1FIBRILLIN-RELATED
ENSZWYP00000020916.1ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2
ENSZWYP00000020917.1
ENSZWYP00000020918.1OXIDASE/PEROXIDASE
ENSZWYP00000020919.1
ENSZWYP00000020920.1
ENSZWYP00000020921.1
ENSZWYP00000020922.1BONUS, ISOFORM C-RELATED
ENSZWYP00000020923.1GALACTOCEREBROSIDASE
ENSZWYP00000020924.1SODIUM/DICARBOXYLATE SYMPORTER-RELATED
ENSZWYP00000020925.1
ENSZWYP00000020926.1DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
ENSZWYP00000020927.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000020928.1
ENSZWYP00000020929.1
ENSZWYP00000020930.1
ENSZWYP00000020931.1
ENSZWYP00000020932.1SODIUM/DICARBOXYLATE SYMPORTER-RELATED
ENSZWYP00000020933.1DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
ENSZWYP00000020934.1
ENSZWYP00000020935.1
ENSZWYP00000020936.1
ENSZWYP00000020937.1
ENSZWYP00000020938.1NEUROTRANSMITTER GATED ION CHANNEL
ENSZWYP00000020939.1
ENSZWYP00000020940.1G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
ENSZWYP00000020941.1HEDGEHOG
ENSZWYP00000020942.1NEUROTRANSMITTER GATED ION CHANNEL
ENSZWYP00000020943.1
ENSZWYP00000020944.1CASPASE
ENSZWYP00000020945.1EH DOMAIN
ENSZWYP00000020946.1
ENSZWYP00000020947.1HISTONE ACETYLTRANSFERASE-RELATED
ENSZWYP00000020948.1SORTING NEXIN
ENSZWYP00000020949.1PDZ AND LIM DOMAIN PROTEIN ZASP
ENSZWYP00000020950.1
ENSZWYP00000020951.1TYROSINE-PROTEIN KINASE RECEPTOR
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