About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021202.1
ENSZWYP00000021203.1FIBROBLAST GROWTH FACTOR
ENSZWYP00000021204.1
ENSZWYP00000021205.1CDK5 AND ABL1 ENZYME SUBSTRATE 1
ENSZWYP00000021206.1THAP DOMAIN-CONTAINING PROTEIN 9
ENSZWYP00000021207.1
ENSZWYP00000021208.1ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1
ENSZWYP00000021209.1-
ENSZWYP00000021210.1BETA-1,4-GALACTOSYLTRANSFERASE
ENSZWYP00000021211.1FIBROBLAST GROWTH FACTOR
ENSZWYP00000021212.1RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
ENSZWYP00000021213.1LEUCOKININ RECEPTOR-RELATED
ENSZWYP00000021214.1ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1
ENSZWYP00000021215.1IFT140/172-RELATED
ENSZWYP00000021216.1RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
ENSZWYP00000021217.1PROMININ PROM PROTEIN
ENSZWYP00000021218.1LEUCOKININ RECEPTOR-RELATED
ENSZWYP00000021219.1
ENSZWYP00000021220.1ZNF44 PROTEIN
ENSZWYP00000021221.1APRATAXIN-RELATED
ENSZWYP00000021222.1CALCIUM BINDING PROTEINS
ENSZWYP00000021223.1
ENSZWYP00000021224.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
ENSZWYP00000021225.1
ENSZWYP00000021226.1BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6
ENSZWYP00000021227.1GALACTOCEREBROSIDASE
ENSZWYP00000021228.1SERINE/THREONINE-PROTEIN KINASE DOA-RELATED
ENSZWYP00000021229.1UNCHARACTERIZED
ENSZWYP00000021230.1POLY A POLYMERASE CID PAP -RELATED
ENSZWYP00000021231.1SPHINGOMYELIN SYNTHETASE
ENSZWYP00000021232.1DELTEX-RELATED
ENSZWYP00000021233.1BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6
ENSZWYP00000021234.1
ENSZWYP00000021235.1
ENSZWYP00000021236.1ARMADILLO REPEAT-CONTAINING PROTEIN 7
ENSZWYP00000021237.1
ENSZWYP00000021238.1GALACTOCEREBROSIDASE
ENSZWYP00000021239.1UNCHARACTERIZED
ENSZWYP00000021240.1SERINE/THREONINE-PROTEIN KINASE DOA-RELATED
ENSZWYP00000021241.1TRANSCRIPTION FACTOR MLR1/2
ENSZWYP00000021242.1
ENSZWYP00000021243.1LIPID PHOSPHATE PHOSPHATASE
ENSZWYP00000021244.1DELTEX-RELATED
ENSZWYP00000021245.1POLY A POLYMERASE CID PAP -RELATED
ENSZWYP00000021246.1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
ENSZWYP00000021247.1-
ENSZWYP00000021248.1SLIT AND NTRK-LIKE PROTEIN 4-RELATED
ENSZWYP00000021249.1ARMADILLO REPEAT-CONTAINING PROTEIN 7
ENSZWYP00000021250.1TRANSCRIPTION FACTOR MLR1/2
ENSZWYP00000021251.1
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