About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020952.1DESTABILASE-RELATED
ENSZWYP00000020953.1COLLAGEN ALPHA
ENSZWYP00000020954.1
ENSZWYP00000020955.1TUDOR DOMAIN CONTAINING PROTEIN
ENSZWYP00000020956.1SET DOMAIN-CONTAINING PROTEIN-RELATED
ENSZWYP00000020957.1
ENSZWYP00000020958.1PDZ AND LIM DOMAIN PROTEIN ZASP
ENSZWYP00000020959.1
ENSZWYP00000020960.1
ENSZWYP00000020961.1
ENSZWYP00000020962.1UNCHARACTERIZED
ENSZWYP00000020963.1TUDOR DOMAIN CONTAINING PROTEIN
ENSZWYP00000020964.1
ENSZWYP00000020965.1SORTING NEXIN
ENSZWYP00000020966.1LYSYL OXIDASE-LIKE-RELATED
ENSZWYP00000020967.1SPERMATOGENESIS-ASSOCIATED 4-RELATED
ENSZWYP00000020968.1
ENSZWYP00000020969.1
ENSZWYP00000020970.1PDZ AND LIM DOMAIN PROTEIN ZASP
ENSZWYP00000020971.1
ENSZWYP00000020972.1
ENSZWYP00000020973.1
ENSZWYP00000020974.1L-THREONINE 3-DEHYDROGENASE
ENSZWYP00000020975.1SPERMATOGENESIS-ASSOCIATED 4-RELATED
ENSZWYP00000020976.1
ENSZWYP00000020977.1PDZ AND LIM DOMAIN PROTEIN ZASP
ENSZWYP00000020978.1
ENSZWYP00000020979.1
ENSZWYP00000020980.1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
ENSZWYP00000020981.1
ENSZWYP00000020982.1TUDOR DOMAIN CONTAINING PROTEIN
ENSZWYP00000020983.1SPERMATOGENESIS-ASSOCIATED 4-RELATED
ENSZWYP00000020984.1
ENSZWYP00000020985.1TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
ENSZWYP00000020986.1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
ENSZWYP00000020987.1SORTING NEXIN
ENSZWYP00000020988.1
ENSZWYP00000020989.1
ENSZWYP00000020990.1DNA PRIMASE LARGE SUBUNIT
ENSZWYP00000020991.1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
ENSZWYP00000020992.1RIBONUCLEASE P SUBUNIT P30
ENSZWYP00000020993.1RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2
ENSZWYP00000020994.1NEUROPEPTIDE Y RECEPTOR
ENSZWYP00000020995.1TUDOR DOMAIN CONTAINING PROTEIN
ENSZWYP00000020996.1
ENSZWYP00000020997.1NG5
ENSZWYP00000020998.1
ENSZWYP00000020999.1TIGHT JUNCTION PROTEIN
ENSZWYP00000021000.1CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
ENSZWYP00000021001.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
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