About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021002.1NEUROPEPTIDE Y RECEPTOR
ENSZWYP00000021003.1RIBONUCLEASE P SUBUNIT P30
ENSZWYP00000021004.1
ENSZWYP00000021005.1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
ENSZWYP00000021006.1CYTOCHROME P450 FAMILY 4
ENSZWYP00000021007.1RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
ENSZWYP00000021008.1
ENSZWYP00000021009.1
ENSZWYP00000021010.1UNNAMED PRODUCT
ENSZWYP00000021011.1
ENSZWYP00000021012.1
ENSZWYP00000021013.1
ENSZWYP00000021014.1
ENSZWYP00000021015.1PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN
ENSZWYP00000021016.1TALIN
ENSZWYP00000021017.1
ENSZWYP00000021018.1CYTOCHROME P450 FAMILY 4
ENSZWYP00000021019.1
ENSZWYP00000021020.1
ENSZWYP00000021021.1
ENSZWYP00000021022.1UNCHARACTERIZED
ENSZWYP00000021023.1
ENSZWYP00000021024.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
ENSZWYP00000021025.1PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN
ENSZWYP00000021026.1BRCA2 AND CDKN1A INTERACTING PROTEIN
ENSZWYP00000021027.1
ENSZWYP00000021028.1MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
ENSZWYP00000021029.1COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 7
ENSZWYP00000021030.1
ENSZWYP00000021031.1UNCHARACTERIZED
ENSZWYP00000021032.1
ENSZWYP00000021033.1TOLL-LIKE RECEPTOR
ENSZWYP00000021034.1CYTOKINE RECEPTOR
ENSZWYP00000021035.1BRCA2 AND CDKN1A INTERACTING PROTEIN
ENSZWYP00000021036.1TUMOR PROTEIN D52
ENSZWYP00000021037.1
ENSZWYP00000021038.1
ENSZWYP00000021039.1MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
ENSZWYP00000021040.1MONOCARBOXYLATE TRANSPORTER
ENSZWYP00000021041.1
ENSZWYP00000021042.1
ENSZWYP00000021043.1TUMOR PROTEIN D52
ENSZWYP00000021044.1
ENSZWYP00000021045.1
ENSZWYP00000021046.1TUMOR PROTEIN D52
ENSZWYP00000021047.1
ENSZWYP00000021048.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
ENSZWYP00000021049.1ATP-DEPENDENT RNA HELICASE DBP3
ENSZWYP00000021050.1COBW-RELATED
ENSZWYP00000021051.1FER-1-LIKE
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