About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08980-
Paelopatides08981REVERSE TRANSCRIPTASE
Paelopatides08982-
Paelopatides08983-
Paelopatides08984IP13529P
Paelopatides08985SI:CH211-196P9.1-RELATED
Paelopatides08986SERINE PROTEASE INHIBITOR KAZAL-TYPE 7 SPINK7
Paelopatides08987PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides08988C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides08989ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08990AGAP008228-PA
Paelopatides08991SODIUM/CALCIUM EXCHANGER
Paelopatides08992-
Paelopatides08993SEC3/SYNTAXIN-RELATED
Paelopatides08996PROTEIN SSUH2 HOMOLOG
Paelopatides08997ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides08998-
Paelopatides08999-
Paelopatides09001-
Paelopatides09002UNCHARACTERIZED
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