About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08870CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08871HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides08872CAVEOLIN
Paelopatides08873-
Paelopatides08874REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08875-
Paelopatides08876BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides08877F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08878NXPE FAMILY MEMBER
Paelopatides08879PROTEIN CBG26694
Paelopatides08880INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides08881SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides08882-
Paelopatides08883-
Paelopatides08884-
Paelopatides08885REVERSE TRANSCRIPTASES
Paelopatides08886PROTEIN CBG26694
Paelopatides08888PROTEIN CBG26694
Paelopatides08889PROTEIN CBG26694
Paelopatides08891-
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