About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09043RHOMBOID-RELATED PROTEIN
Paelopatides09044PROTEIN CBG26694
Paelopatides09045BONUS, ISOFORM C-RELATED
Paelopatides09046REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09047SH3 MULTIPLE DOMAIN
Paelopatides09048PROTEIN CBG26694
Paelopatides09049PARANEOPLASTIC ANTIGEN
Paelopatides09050POL PROTEIN
Paelopatides09051NETRIN RECEPTOR UNC5
Paelopatides09052ENDONUCLEASE
Paelopatides09053OS05G0310600 PROTEIN
Paelopatides09055-
Paelopatides09056ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides09057ETS
Paelopatides09059ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides09060L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides09061RETROTRANSPOSON
Paelopatides09062ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides09063-
Paelopatides09064DNA HELICASE RECQ FAMILY MEMBER
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