Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s068.g0009.t1 | |
| Lsat_s068.g0010.t1 | COATOMER |
| Lsat_s068.g0011.t1 | DYNEIN REGULATORY COMPLEX PROTEIN 9 |
| Lsat_s068.g0012.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| Lsat_s068.g0013.t1 | ASPARTYL-TRNA SYNTHETASE |
| Lsat_s068.g0014.t1 | PR DOMAIN ZINC FINGER PROTEIN |
| Lsat_s068.g0015.t1 | DDRGK DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s068.g0016.t1 | UNCHARACTERIZED |
| Lsat_s068.g0017.t1 | SPECKLE-TYPE POZ PROTEIN |
| Lsat_s068.g0018.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Lsat_s068.g0019.t1 | FMRFAMIDE RECEPTOR-RELATED |
| Lsat_s068.g0020.t1 | |
| Lsat_s068.g0021.t1 | |
| Lsat_s068.g0022.t1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s068.g0023.t1 | |
| Lsat_s068.g0024.t1 | TIPA |
| Lsat_s068.g0025.t1 | |
| Lsat_s068.g0026.t1 | |
| Lsat_s068.g0027.t1 | |
| Lsat_s068.g0028.t1 | C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED |
| Lsat_s068.g0029.t1 | UNCHARACTERIZED |
| Lsat_s068.g0030.t1 | CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN |
| Lsat_s068.g0031.t1 | TRANSCRIPTION INTERMEDIARY FACTOR |
| Lsat_s068.g0032.t1 | |
| Lsat_s068.g0033.t1 | TRANSCRIPTION INTERMEDIARY FACTOR |
| Lsat_s068.g0034.t1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 |
| Lsat_s068.g0035.t1 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL |
| Lsat_s068.g0036.t1 | JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1 |
| Lsat_s068.g0037.t1 | 26 PROTEASOME COMPLEX SUBUNIT DSS1 |
| Lsat_s068.g0038.t1 | |
| Lsat_s068.g0039.t1 | |
| Lsat_s068.g0040.t1 | THAP DOMAIN PROTEIN |
| Lsat_s068.g0041.t1 | DEOXYRIBONUCLEASE |
| Lsat_s068.g0042.t1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| Lsat_s068.g0043.t1 | PROTEASOME SUBUNIT ALPHA/BETA |
| Lsat_s068.g0044.t1 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C |
| Lsat_s068.g0045.t1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
| Lsat_s068.g0046.t1 | |
| Lsat_s068.g0047.t1 | DIACYLGLYCEROL KINASE |
| Lsat_s068.g0048.t1 | |
| Lsat_s068.g0049.t1 | MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE |
| Lsat_s068.g0050.t1 | KU AUTOANTIGEN DNA HELICASE |
| Lsat_s068.g0051.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s068.g0052.t1 | |
| Lsat_s068.g0053.t1 | |
| Lsat_s068.g0054.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
| Lsat_s068.g0055.t1 | |
| Lsat_s068.g0056.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
| Lsat_s068.g0057.t1 | METALLOPHOSPHOESTERASE |
| Lsat_s068.g0058.t1 |
