About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09739RETROTRANSPOSON
Paelopatides09740PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides09741-
Paelopatides09742INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6
Paelopatides09743PUTATIVE-RELATED
Paelopatides09744PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides09745ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides09746APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides09747-
Paelopatides09748-
Paelopatides09749-
Paelopatides09750-
Paelopatides09753SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides09754CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR
Paelopatides09755DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides09756DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides09757MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides09758-
Paelopatides09759ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides09760L1 TRANSPOSABLE ELEMENT-RELATED
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