About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_14911-0.3
Bpl_scaf_14919-0.0
Bpl_scaf_14919-0.5
Bpl_scaf_14919-1.0PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_14919-3.8ABC TRANSPORTER G FAMILY MEMBER 28
Bpl_scaf_14919-3.9
Bpl_scaf_14919-4.10
Bpl_scaf_14919-4.11
Bpl_scaf_14919-4.12E3 UBIQUITIN-PROTEIN LIGASE TTC3
Bpl_scaf_14919-5.10THIOPURINE S-METHYLTRANSFERASE
Bpl_scaf_14919-5.11ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Bpl_scaf_14921-0.1
Bpl_scaf_14921-0.4PARANEOPLASTIC ANTIGEN
Bpl_scaf_14932-1.10TUBULIN POLYGLUTAMYLASE
Bpl_scaf_14932-1.32
Bpl_scaf_14932-2.2SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Bpl_scaf_14932-3.17FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
Bpl_scaf_14932-4.4TRNA-SPECIFIC ADENOSINE DEAMINASE 1
Bpl_scaf_14932-5.15BLUE CHEESE
Bpl_scaf_14932-5.18
Bpl_scaf_14932-5.5
Bpl_scaf_14941-0.4CARBONIC ANHYDRASE
Bpl_scaf_14941-0.5
Bpl_scaf_14946-0.0
Bpl_scaf_14946-0.29
Bpl_scaf_14946-0.30
Bpl_scaf_14946-0.5
Bpl_scaf_14946-0.7
Bpl_scaf_14963-0.12H2HPP ISOMERASE
Bpl_scaf_14963-0.13MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
Bpl_scaf_14973-0.11
Bpl_scaf_14973-0.12ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_14973-0.38TRANSPOSON
Bpl_scaf_14973-0.6ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_14979-0.11
Bpl_scaf_14979-0.172-5A-DEPENDENT RIBONUCLEASE
Bpl_scaf_14980-0.11BONUS, ISOFORM C-RELATED
Bpl_scaf_14980-0.16BONUS, ISOFORM C-RELATED
Bpl_scaf_14980-0.17BONUS, ISOFORM C-RELATED
Bpl_scaf_14980-0.7BONUS, ISOFORM C-RELATED
Bpl_scaf_14980-0.9BONUS, ISOFORM C-RELATED
Bpl_scaf_14980-1.8HL07962P-RELATED
Bpl_scaf_14980-2.65'-NUCLEOTIDASE-RELATED
Bpl_scaf_14980-2.75'-NUCLEOTIDASE-RELATED
Bpl_scaf_14980-3.3POPEYE DOMAIN CONTAINING PROTEIN
Bpl_scaf_14980-3.7
Bpl_scaf_14980-4.2POPEYE DOMAIN CONTAINING PROTEIN
Bpl_scaf_14986-0.13CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_14986-0.14ATP-DEPENDENT DNA HELICASE
Bpl_scaf_14986-0.15NEPHRIN
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