Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_14697-3.3 | CAMP-DEPENDENT PROTEIN KINASE INHIBITOR/PKI |
| Bpl_scaf_14697-3.4 | SERINE INCORPORATOR |
| Bpl_scaf_14697-3.6 | SERINE INCORPORATOR |
| Bpl_scaf_14727-0.0 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_14727-0.1 | |
| Bpl_scaf_14727-0.2 | |
| Bpl_scaf_14738-0.4 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_14738-3.9 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Bpl_scaf_14738-4.19 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Bpl_scaf_14738-4.2 | SIMILAR TO CDNA SEQUENCE BC052040 |
| Bpl_scaf_14738-4.9 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| Bpl_scaf_14755-0.0 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Bpl_scaf_14775-0.3 | IQ DOMAIN-CONTAINING PROTEIN M |
| Bpl_scaf_1478-0.4 | |
| Bpl_scaf_14784-0.0 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_14784-0.11 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_14784-0.12 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_14784-0.17 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_14790-0.3 | |
| Bpl_scaf_14799-0.0 | |
| Bpl_scaf_14799-0.2 | |
| Bpl_scaf_14808-0.5 | |
| Bpl_scaf_14808-1.4 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_14808-1.5 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Bpl_scaf_14808-1.8 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Bpl_scaf_14808-2.4 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| Bpl_scaf_14808-4.10 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Bpl_scaf_14808-4.11 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Bpl_scaf_14808-4.9 | |
| Bpl_scaf_14809-0.0 | |
| Bpl_scaf_14809-0.2 | |
| Bpl_scaf_14819-0.11 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| Bpl_scaf_14842-0.2 | CEREBELLIN-RELATED |
| Bpl_scaf_14842-0.3 | |
| Bpl_scaf_14849-0.11 | FANCONI ANEMIA GROUP A PROTEIN |
| Bpl_scaf_14849-0.15 | FANCONI ANEMIA GROUP A PROTEIN |
| Bpl_scaf_14859-0.12 | |
| Bpl_scaf_14859-0.13 | |
| Bpl_scaf_14859-0.9 | |
| Bpl_scaf_14863-0.0 | |
| Bpl_scaf_14863-0.1 | |
| Bpl_scaf_14863-0.2 | |
| Bpl_scaf_14871-0.3 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_14878-0.2 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_14890-0.0 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Bpl_scaf_14890-0.4 | |
| Bpl_scaf_14903-0.27 | FI14130P |
| Bpl_scaf_14903-0.3 | PR DOMAIN ZINC FINGER PROTEIN |
| Bpl_scaf_1491-0.5 | PROTEIN DISPATCHED-RELATED |
| Bpl_scaf_14911-0.10 |
