Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_14560-1.10 | |
| Bpl_scaf_14560-1.6 | |
| Bpl_scaf_1457-0.2 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| Bpl_scaf_14571-0.0 | |
| Bpl_scaf_14664-0.19 | PROTEIN TRANSPORT PROTEIN SEC23 |
| Bpl_scaf_14664-0.21 | UNCHARACTERIZED |
| Bpl_scaf_14664-0.23 | 26S PROTEASOME REGULATORY SUBUNIT |
| Bpl_scaf_14664-0.47 | CLATHRIN HEAVY CHAIN RELATED |
| Bpl_scaf_14664-0.48 | RHO FAMILY GTPASE |
| Bpl_scaf_14664-0.52 | |
| Bpl_scaf_14664-0.53 | L-ASPARAGINASE |
| Bpl_scaf_14664-0.8 | |
| Bpl_scaf_14668-0.7 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_14669-0.6 | INTERLEUKIN-1 RECEPTOR FAMILY MEMBER |
| Bpl_scaf_14670-0.1 | |
| Bpl_scaf_14670-1.4 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Bpl_scaf_14670-1.6 | |
| Bpl_scaf_14670-1.7 | G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED |
| Bpl_scaf_14670-2.10 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| Bpl_scaf_14670-2.5 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_14670-3.1 | |
| Bpl_scaf_14670-3.10 | LD33804P |
| Bpl_scaf_14670-3.9 | |
| Bpl_scaf_14671-0.12 | CHITIN SYNTHASE |
| Bpl_scaf_14671-0.13 | CHITIN SYNTHASE |
| Bpl_scaf_14671-0.16 | AGAP011099-PA |
| Bpl_scaf_14671-0.35 | |
| Bpl_scaf_14671-0.4 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_14671-0.42 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_14671-0.43 | CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 |
| Bpl_scaf_14673-0.5 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
| Bpl_scaf_14673-0.6 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
| Bpl_scaf_14674-0.0 | |
| Bpl_scaf_14675-0.10 | TETRATRICOPEPTIDE REPEAT PROTEIN 22 |
| Bpl_scaf_14676-0.6 | MALE STERILITY PROTEIN 2-RELATED |
| Bpl_scaf_14676-1.4 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_14676-1.9 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_14684-0.0 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
| Bpl_scaf_14686-1.11 | |
| Bpl_scaf_14686-1.15 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_14686-2.1 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_14686-2.8 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_14686-3.14 | |
| Bpl_scaf_14686-3.16 | TETRATRICOPEPTIDE REPEAT PROTEIN 22 |
| Bpl_scaf_14686-3.6 | TETRATRICOPEPTIDE REPEAT PROTEIN 22 |
| Bpl_scaf_14686-3.7 | |
| Bpl_scaf_14688-0.3 | |
| Bpl_scaf_14692-0.0 | |
| Bpl_scaf_14697-2.12 | RIBOPHORIN II |
| Bpl_scaf_14697-2.7 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
