Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s088.g0027.t1 | CONTACTIN 5 |
Lsat_s088.g0028.t1 | TYROSINE-PROTEIN PHOSPHATASE |
Lsat_s088.g0029.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
Lsat_s088.g0030.t1 | CORTACTIN AND DREBRIN |
Lsat_s088.g0031.t1 | |
Lsat_s088.g0032.t1 | |
Lsat_s088.g0033.t1 | |
Lsat_s088.g0034.t1 | |
Lsat_s088.g0035.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s088.g0036.t1 | |
Lsat_s088.g0037.t1 | UNC-93 RELATED |
Lsat_s088.g0038.t1 | NEPHRIN |
Lsat_s088.g0039.t1 | PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN |
Lsat_s088.g0040.t1 | SOLUTE CARRIER FAMILY 5 |
Lsat_s088.g0041.t1 | SOLUTE CARRIER FAMILY 5 |
Lsat_s088.g0042.t1 | METABOTROPIC GLUTAMATE RECEPTOR |
Lsat_s088.g0043.t1 | METABOTROPIC GLUTAMATE RECEPTOR |
Lsat_s088.g0044.t1 | METABOTROPIC GLUTAMATE RECEPTOR |
Lsat_s088.g0045.t1 | |
Lsat_s088.g0046.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
Lsat_s088.g0047.t1 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
Lsat_s088.g0048.t1 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
Lsat_s088.g0049.t1 | REPETIN |
Lsat_s088.g0050.t1 | |
Lsat_s088.g0051.t1 | SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE |
Lsat_s088.g0052.t1 | VACUOLAR SORTING PROTEIN 53 |
Lsat_s088.g0053.t1 | SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE |
Lsat_s088.g0054.t1 | PBS LYASE HEAT-LIKE PROTEIN |
Lsat_s088.g0055.t1 | PBS LYASE HEAT-LIKE PROTEIN |
Lsat_s088.g0056.t1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
Lsat_s088.g0057.t1 | |
Lsat_s088.g0058.t1 | |
Lsat_s088.g0059.t1 | |
Lsat_s088.g0060.t1 | LP04239P |
Lsat_s088.g0061.t1 | FIBROSIN FAMILY MEMBER |
Lsat_s088.g0062.t1 | |
Lsat_s088.g0063.t1 | 42-9-9 PROTEIN-RELATED |
Lsat_s088.g0064.t1 | SH3 MULTIPLE DOMAIN |
Lsat_s088.g0065.t1 | UNCHARACTERIZED |
Lsat_s088.g0066.t1 | UNCHARACTERIZED |
Lsat_s088.g0067.t1 | UBIQUITIN-PROTEIN LIGASE E3C |
Lsat_s088.g0068.t1 | |
Lsat_s088.g0069.t1 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Lsat_s088.g0070.t1 | RNA-BINDING MOTIF PROTEIN 14B |
Lsat_s088.g0071.t1 | |
Lsat_s088.g0072.t1 | |
Lsat_s088.g0073.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Lsat_s088.g0074.t1 | |
Lsat_s088.g0075.t1 | FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN |
Lsat_s088.g0076.t1 | LIM/HOMEOBOX PROTEIN LHX |