Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s103.g0005.t1 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
Lsat_s103.g0006.t1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
Lsat_s103.g0007.t1 | DNA REPAIR ENDONUCLEASE XPF |
Lsat_s103.g0008.t1 | UNCHARACTERIZED |
Lsat_s103.g0009.t1 | |
Lsat_s103.g0010.t1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Lsat_s103.g0011.t1 | COLLAGEN ALPHA |
Lsat_s103.g0012.t1 | PROTEIN CBG10425 |
Lsat_s103.g0013.t1 | CYTOKINE RECEPTOR |
Lsat_s103.g0014.t1 | CYTOKINE RECEPTOR |
Lsat_s103.g0015.t1 | NADPH OXIDASE |
Lsat_s103.g0016.t1 | NADPH OXIDASE |
Lsat_s103.g0017.t1 | NADPH OXIDASE |
Lsat_s103.g0018.t1 | |
Lsat_s103.g0019.t1 | |
Lsat_s103.g0020.t1 | NADPH OXIDASE |
Lsat_s103.g0021.t1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
Lsat_s103.g0022.t1 | |
Lsat_s103.g0023.t1 | |
Lsat_s103.g0024.t1 | |
Lsat_s103.g0025.t1 | |
Lsat_s103.g0026.t1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
Lsat_s103.g0027.t1 | SOLUTE CARRIER FAMILY 13 MEMBER |
Lsat_s103.g0028.t1 | |
Lsat_s103.g0029.t1 | |
Lsat_s103.g0030.t1 | |
Lsat_s103.g0031.t1 | |
Lsat_s103.g0032.t1 | |
Lsat_s103.g0033.t1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
Lsat_s103.g0034.t1 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
Lsat_s103.g0035.t1 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
Lsat_s103.g0036.t1 | TRANSPOSASE-RELATED |
Lsat_s103.g0037.t1 | |
Lsat_s103.g0038.t1 | HILLARIN |
Lsat_s103.g0039.t1 | HILLARIN |
Lsat_s103.g0040.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0041.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0042.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0043.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0044.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0045.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0046.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s103.g0047.t1 | |
Lsat_s103.g0048.t1 | |
Lsat_s103.g0049.t1 | |
Lsat_s103.g0050.t1 | |
Lsat_s103.g0051.t1 | SPHINGOMYELIN PHOSPHODIESTERASE |
Lsat_s103.g0052.t1 | SPHINGOMYELIN PHOSPHODIESTERASE |
Lsat_s103.g0053.t1 | |
Lsat_s103.g0054.t1 |