Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s108.g0036.t1 | SUPPRESSOR OF FUSED |
| Lsat_s108.g0037.t1 | RIBOSOMAL RNA METHYLTRANSFERASE |
| Lsat_s108.g0038.t1 | FLAVIN REDUCTASE |
| Lsat_s108.g0039.t1 | 30S 40S RIBOSOMAL PROTEIN |
| Lsat_s108.g0040.t1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| Lsat_s108.g0041.t1 | |
| Lsat_s108.g0042.t1 | |
| Lsat_s108.g0043.t1 | - |
| Lsat_s108.g0044.t1 | CENTROSOMAL PROTEIN 2 |
| Lsat_s108.g0045.t1 | CMF/LEK/CENP CELL DIVISION-RELATED |
| Lsat_s108.g0046.t1 | LYR MOTIF-CONTAINING PROTEIN 1 |
| Lsat_s108.g0047.t1 | PROTEIN PHOSPHATASE 2C |
| Lsat_s108.g0048.t1 | RP42 RELATED |
| Lsat_s108.g0049.t1 | AMINE OXIDASE |
| Lsat_s108.g0050.t1 | ADP-RIBOSYLATION-LIKE FACTOR 6-INTERACTING PROTEIN |
| Lsat_s108.g0051.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s108.g0052.t1 | |
| Lsat_s108.g0053.t1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
| Lsat_s108.g0054.t1 | LP21163P |
| Lsat_s108.g0055.t1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| Lsat_s108.g0056.t1 | PROTEIN CBG11604 |
| Lsat_s108.g0057.t1 | DED DOMAIN-CONTAINING PROTEIN |
| Lsat_s108.g0058.t1 | TYROSYL-TRNA SYNTHETASE |
| Lsat_s108.g0059.t1 | PROMETHIN |
| Lsat_s108.g0060.t1 | GLUTATHIONE S-TRANSFERASE |
| Lsat_s108.g0061.t1 | GLUTATHIONE S-TRANSFERASE |
| Lsat_s108.g0062.t1 | GLUTATHIONE S-TRANSFERASE |
| Lsat_s108.g0063.t1 | GLUTATHIONE S-TRANSFERASE |
| Lsat_s108.g0064.t1 | SEC31-RELATED PROTEIN |
| Lsat_s108.g0065.t1 | PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
| Lsat_s108.g0066.t1 | PROLIFERATING CELL NUCLEAR ANTIGEN |
| Lsat_s108.g0067.t1 | PRE-MRNA-SPLICING FACTOR RBM22 |
| Lsat_s108.g0068.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| Lsat_s108.g0069.t1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| Lsat_s108.g0070.t1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| Lsat_s108.g0071.t1 | DED DOMAIN-CONTAINING PROTEIN |
| Lsat_s108.g0072.t1 | |
| Lsat_s108.g0073.t1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Lsat_s108.g0074.t1 | |
| Lsat_s108.g0075.t1 | |
| Lsat_s108.g0076.t1 | |
| Lsat_s108.g0077.t1 | PEPTIDASE |
| Lsat_s108.g0078.t1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| Lsat_s108.g0079.t1 | ANKYRIN REPEAT DOMAIN 40 |
| Lsat_s108.g0080.t1 | RNA-BINDING PROTEIN |
| Lsat_s108.g0081.t1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| Lsat_s109.g0001.t1 | |
| Lsat_s109.g0002.t1 | |
| Lsat_s109.g0003.t1 | |
| Lsat_s109.g0004.t1 |
