Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s107.g0037.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 31 |
| Lsat_s107.g0038.t1 | |
| Lsat_s107.g0039.t1 | GALACTOCEREBROSIDASE |
| Lsat_s107.g0040.t1 | CALCIUM BINDING PROTEIN |
| Lsat_s107.g0041.t1 | |
| Lsat_s107.g0042.t1 | |
| Lsat_s107.g0043.t1 | |
| Lsat_s107.g0044.t1 | |
| Lsat_s107.g0045.t1 | PROTEIN CBG26694 |
| Lsat_s107.g0046.t1 | |
| Lsat_s107.g0047.t1 | PROTEIN CBG26694 |
| Lsat_s107.g0048.t1 | |
| Lsat_s107.g0049.t1 | - |
| Lsat_s107.g0050.t1 | |
| Lsat_s107.g0051.t1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| Lsat_s108.g0001.t1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Lsat_s108.g0002.t1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Lsat_s108.g0003.t1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Lsat_s108.g0004.t1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| Lsat_s108.g0005.t1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| Lsat_s108.g0006.t1 | |
| Lsat_s108.g0007.t1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Lsat_s108.g0008.t1 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
| Lsat_s108.g0009.t1 | ADENYLOSUCCINATE LYASE |
| Lsat_s108.g0010.t1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s108.g0011.t1 | IMPORTIN BETA |
| Lsat_s108.g0012.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0013.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0014.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0015.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0016.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0017.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0018.t1 | |
| Lsat_s108.g0019.t1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Lsat_s108.g0020.t1 | ADENYLOSUCCINATE LYASE |
| Lsat_s108.g0021.t1 | |
| Lsat_s108.g0022.t1 | NUCLEAR PROTEIN LOCALIZATION 4 |
| Lsat_s108.g0023.t1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| Lsat_s108.g0024.t1 | MRNA EDITING ENZYME |
| Lsat_s108.g0025.t1 | UNCHARACTERIZED |
| Lsat_s108.g0026.t1 | TRANSMEMBRANE PROTEIN 72 |
| Lsat_s108.g0027.t1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Lsat_s108.g0028.t1 | - |
| Lsat_s108.g0029.t1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| Lsat_s108.g0030.t1 | GLUTAMATE DEHYDROGENASE |
| Lsat_s108.g0031.t1 | TETRASPANIN |
| Lsat_s108.g0032.t1 | GEO09659P1 |
| Lsat_s108.g0033.t1 | CELL DIVISION PROTEIN KINASE |
| Lsat_s108.g0034.t1 | CYTOCHROME B-245 CHAPERONE 1 |
| Lsat_s108.g0035.t1 | REGULATORY-ASSOCIATED PROTEIN OF MTOR |
