About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11309RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR
Paelopatides11310METHYLENETETRAHYDROFOLATE REDUCTASE
Paelopatides11311-
Paelopatides11312DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides11313-
Paelopatides11314APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides11315APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides11316-
Paelopatides11317PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides11318ACYL-COA SYNTHETASE
Paelopatides11319-
Paelopatides11320-
Paelopatides11321ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL
Paelopatides11322-
Paelopatides11323REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11324E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Paelopatides11325SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides11326GAG-RELATED PROTEIN
Paelopatides11327SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides11328PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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