About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11329L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides11330SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN
Paelopatides11331ARGININE AND GLUTAMATE-RICH PROTEIN 1
Paelopatides11332DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides11333-
Paelopatides11334POL PROTEIN
Paelopatides11335-
Paelopatides11336-
Paelopatides11337SORTING NEXIN 20, 21
Paelopatides11338-
Paelopatides11339RING FINGER PROTEIN 31-RELATED
Paelopatides11340PROTEIN CBG26694
Paelopatides11341REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11342REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11343PROTEIN CBG26694
Paelopatides11344ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides11345-
Paelopatides11346-
Paelopatides11347-
Paelopatides11348INTEGRASE CORE DOMAIN CONTAINING PROTEIN
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