About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11381CARNITINE O-ACYLTRANSFERASE
Paelopatides11382PROTEIN CBG26694
Paelopatides113832-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE
Paelopatides11384-
Paelopatides11385WD REPEAT CONTAINING PROTEIN 3 WDR3
Paelopatides11386-
Paelopatides11387-
Paelopatides11388REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11389-
Paelopatides11390PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides11391MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Paelopatides11392UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides11393-
Paelopatides11394PROTEIN CBG26694
Paelopatides11395PROTEIN CBG26694
Paelopatides11396ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides11397ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides11398-
Paelopatides11399-
Paelopatides11400-
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