About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_15282-9.9BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Bpl_scaf_15284-0.2
Bpl_scaf_15287-0.9SOLUTE CARRIER FAMILY 17
Bpl_scaf_15288-0.0
Bpl_scaf_15288-0.1HISTONE H2B
Bpl_scaf_15289-0.5
Bpl_scaf_15290-0.1
Bpl_scaf_15290-0.4
Bpl_scaf_15293-0.4
Bpl_scaf_15293-0.9BONUS, ISOFORM C-RELATED
Bpl_scaf_15293-3.2
Bpl_scaf_15293-3.3
Bpl_scaf_15293-3.4
Bpl_scaf_15294-0.10DUAL SPECIFICITY PROTEIN KINASE
Bpl_scaf_15294-0.11DUAL SPECIFICITY PROTEIN KINASE
Bpl_scaf_15294-0.9
Bpl_scaf_15294-1.7CELL DEATH REGULATOR AVEN
Bpl_scaf_15294-1.8NUCLEAR HORMONE RECEPTOR
Bpl_scaf_15294-10.5CONTACTIN 5
Bpl_scaf_15294-10.6
Bpl_scaf_15294-11.12
Bpl_scaf_15294-12.10
Bpl_scaf_15294-12.11
Bpl_scaf_15294-12.7
Bpl_scaf_15294-12.9
Bpl_scaf_15294-3.4UNCHARACTERIZED
Bpl_scaf_15294-4.13SORTING NEXIN FAMILY MEMBER
Bpl_scaf_15294-4.16COILED-COIL DOMAIN-CONTAINING PROTEIN 175
Bpl_scaf_15294-4.22
Bpl_scaf_15294-4.24CYSTEINE-RICH PDZ-BINDING PROTEIN
Bpl_scaf_15294-5.0TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_15294-6.17GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
Bpl_scaf_15294-6.18SERUM RESPONSE FACTOR HOMOLOG
Bpl_scaf_15294-6.19SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Bpl_scaf_15294-7.7PROBABLE MEMBRANE PROTEIN DUF221-RELATED
Bpl_scaf_15294-8.16NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
Bpl_scaf_15294-9.14
Bpl_scaf_15294-9.30SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Bpl_scaf_15294-9.32G PROTEIN-COUPLED RECEPTOR 157-RELATED
Bpl_scaf_15301-0.5
Bpl_scaf_15309-0.1VERTNIN
Bpl_scaf_15316-0.0
Bpl_scaf_15324-0.1
Bpl_scaf_15333-0.3
Bpl_scaf_15333-0.4CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR
Bpl_scaf_15343-0.10
Bpl_scaf_15343-0.6
Bpl_scaf_15351-0.13DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
Bpl_scaf_15355-0.2DNA LIGASE 1/3 FAMILY MEMBER
Bpl_scaf_1536-0.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
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