About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12850-
Paelopatides12851ENZYMATIC POLYPROTEIN-RELATED
Paelopatides12852ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12853-
Paelopatides12854SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides12855-
Paelopatides12856OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides12857ENZYMATIC POLYPROTEIN-RELATED
Paelopatides12858PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides12859PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides12860TRIPLE QXXK/R MOTIF-CONTAINING PROTEIN
Paelopatides12861ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides12862TRYPTOPHANYL-TRNA SYNTHETASE
Paelopatides12863TRYPTOPHAN 2,3-DIOXYGENASE
Paelopatides12864COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides12865COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides12866COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides12867ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12868CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Paelopatides12869C2H2-TYPE DOMAIN-CONTAINING PROTEIN
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