About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12786PROTEIN CBG26694
Paelopatides12787AGAP008228-PA
Paelopatides12788TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
Paelopatides12790TRANSPOSABLE ELEMENT-RELATED
Paelopatides12791TRANSPOSABLE ELEMENT-RELATED
Paelopatides12792-
Paelopatides12793POL PROTEIN
Paelopatides12794L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides12795-
Paelopatides12796-
Paelopatides12797-
Paelopatides12798-
Paelopatides12799-
Paelopatides12800ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12801CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12802MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides12803ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12804SI:CH211-196P9.1-RELATED
Paelopatides12805DNA HELICASE RECQ FAMILY MEMBER
Paelopatides12806NEUROTRANSMITTER GATED ION CHANNEL
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