About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12658FI04643P-RELATED
Paelopatides12659ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12660-
Paelopatides12661-
Paelopatides12662DTDP-4-DEHYDRORHAMNOSE REDUCTASE
Paelopatides12663PROTEIN CBG26694
Paelopatides12664PROTEIN CBG26694
Paelopatides12665PROTEIN CBG24663
Paelopatides12666PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
Paelopatides12755FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12756TYROSINE-PROTEIN KINASE
Paelopatides12757-
Paelopatides12758-
Paelopatides12759ATP7, ISOFORM B
Paelopatides12760ATP7, ISOFORM B
Paelopatides12761REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides12762FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12763-
Paelopatides12764REVERSE TRANSCRIPTASE
Paelopatides12765-
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