Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_8753-1.0 | |
| Bpl_scaf_8753-1.6 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_8763-0.2 | |
| Bpl_scaf_8764-1.16 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
| Bpl_scaf_8764-1.17 | ES-2 PROTEIN - RELATED |
| Bpl_scaf_8764-1.23 | WD40 REPEAT PROTEIN |
| Bpl_scaf_8764-1.9 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_8772-0.0 | SIDESTEP PROTEIN |
| Bpl_scaf_8774-0.5 | CUBILIN |
| Bpl_scaf_8774-1.4 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
| Bpl_scaf_8775-0.0 | |
| Bpl_scaf_8775-0.2 | |
| Bpl_scaf_8775-1.3 | |
| Bpl_scaf_8775-1.5 | |
| Bpl_scaf_8775-10.6 | NUMB |
| Bpl_scaf_8775-10.7 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
| Bpl_scaf_8775-11.0 | |
| Bpl_scaf_8775-11.10 | |
| Bpl_scaf_8775-11.9 | DNA POLYMERASE EPSILON SUBUNIT B |
| Bpl_scaf_8775-12.5 | HOMEOBOX PROTEIN ARISTALESS |
| Bpl_scaf_8775-12.6 | DRAB11-RELATED |
| Bpl_scaf_8775-13.14 | - |
| Bpl_scaf_8775-13.15 | |
| Bpl_scaf_8775-13.2 | |
| Bpl_scaf_8775-13.6 | SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL |
| Bpl_scaf_8775-14.2 | |
| Bpl_scaf_8775-14.4 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Bpl_scaf_8775-15.12 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_8775-15.15 | PROTEIN SGT1 HOMOLOG |
| Bpl_scaf_8775-15.17 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_8775-15.8 | |
| Bpl_scaf_8775-16.3 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| Bpl_scaf_8775-16.4 | CHLORIDE CHANNEL PROTEIN |
| Bpl_scaf_8775-17.8 | ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG |
| Bpl_scaf_8775-17.9 | THIOREDOXIN |
| Bpl_scaf_8775-2.15 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_8775-2.16 | RHO FAMILY GTPASE |
| Bpl_scaf_8775-2.4 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Bpl_scaf_8775-3.6 | ATP-DEPENDENT RNA HELICASE |
| Bpl_scaf_8775-3.7 | CELL DIVISION PROTEIN KINASE |
| Bpl_scaf_8775-4.10 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Bpl_scaf_8775-4.8 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| Bpl_scaf_8775-4.9 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Bpl_scaf_8775-5.1 | |
| Bpl_scaf_8775-5.16 | |
| Bpl_scaf_8775-5.17 | |
| Bpl_scaf_8775-5.9 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_8775-6.10 | |
| Bpl_scaf_8775-6.4 | |
| Bpl_scaf_8775-6.5 |
