Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_8775-6.9 | |
| Bpl_scaf_8775-7.13 | GENERAL RECEPTOR FOR PHOSPHOINOSITIDES 1-ASSOCIATED SCAFFOLD PROTEIN-RELATED |
| Bpl_scaf_8775-7.14 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_8775-7.15 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_8775-8.7 | |
| Bpl_scaf_8775-9.10 | |
| Bpl_scaf_8775-9.11 | - |
| Bpl_scaf_8775-9.5 | |
| Bpl_scaf_8775-9.6 | |
| Bpl_scaf_8781-0.2 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_8784-0.6 | C2H2 ZINC FINGER CGI-62-RELATED |
| Bpl_scaf_8784-0.7 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| Bpl_scaf_8784-1.12 | |
| Bpl_scaf_8784-1.18 | |
| Bpl_scaf_8784-1.19 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 5 |
| Bpl_scaf_8784-1.20 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
| Bpl_scaf_8797-0.3 | |
| Bpl_scaf_8797-1.15 | |
| Bpl_scaf_8797-1.17 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_8797-1.18 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_8797-1.19 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_8797-1.23 | ARGININE AND GLUTAMATE-RICH PROTEIN 1 |
| Bpl_scaf_8797-1.26 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_8797-1.36 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| Bpl_scaf_8797-1.8 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_8803-0.0 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_8807-0.3 | ADENOSINE DEAMINASE |
| Bpl_scaf_8807-1.18 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_8807-1.28 | ANTIGEN BSP, PUTATIVE-RELATED |
| Bpl_scaf_8807-1.29 | PRE-MRNA-SPLICING FACTOR CWF18 |
| Bpl_scaf_8807-1.30 | TRAF3-INTERACTING PROTEIN 1 |
| Bpl_scaf_8807-1.32 | TRAF3-INTERACTING PROTEIN 1 |
| Bpl_scaf_881-0.11 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| Bpl_scaf_881-0.8 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_8819-0.6 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| Bpl_scaf_8819-0.7 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Bpl_scaf_8819-1.13 | SAPOSIN-RELATED |
| Bpl_scaf_8819-1.18 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Bpl_scaf_8819-1.35 | FORKHEAD BOX PROTEIN J1 |
| Bpl_scaf_8819-2.12 | EXOCYST COMPLEX PROTEIN EXO70 |
| Bpl_scaf_8819-2.14 | WW DOMAIN-BINDING PROTEIN 11 |
| Bpl_scaf_8819-2.19 | FORKHEAD BOX PROTEIN J1 |
| Bpl_scaf_8824-0.0 | MYOSIN |
| Bpl_scaf_8829-0.0 | |
| Bpl_scaf_8834-0.0 | |
| Bpl_scaf_8837-0.2 | |
| Bpl_scaf_8840-0.4 | PLACENTAL PROTEIN 11-RELATED |
| Bpl_scaf_8844-0.3 | |
| Bpl_scaf_8844-1.0 | |
| Bpl_scaf_8844-1.1 |
