About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14862MAINTENANCE OF TELOMOERE CAPPING
Paelopatides14863-
Paelopatides14864REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14865TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides14866OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Paelopatides14867-
Paelopatides14868ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 22
Paelopatides14869ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
Paelopatides14870PROTEIN CBG26694
Paelopatides14871FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14872PROTEIN ARGININE N-METHYLTRANSFERASE
Paelopatides14873FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14874FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14875POL PROTEIN
Paelopatides14876-
Paelopatides14877-
Paelopatides14878-
Paelopatides14879LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
Paelopatides14880PROTEASOME ASSEMBLY CHAPERONE 4
Paelopatides14881-
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