About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14882PROTEIN CBG26694
Paelopatides14883T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides14884ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14885ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14886-
Paelopatides14887REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14888-
Paelopatides14890SODIUM-BILE ACID COTRANSPORTER
Paelopatides14891-
Paelopatides14892-
Paelopatides14893PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Paelopatides14894-
Paelopatides14895CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14896PROTEIN CBG26694
Paelopatides14897DISKS LARGE HOMOLOG 5
Paelopatides14898-
Paelopatides14899CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14900CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14901SYNAPTOBREVIN FAMILY MEMBER
Paelopatides14902INACTIVE TYROSINE-PROTEIN KINASE 7
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