About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15215PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides15216BUCENTAUR RELATED
Paelopatides15217REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15218UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides15219DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides15220-
Paelopatides15221G PROTEIN-COUPLED RECEPTOR
Paelopatides15222METHIONINE-R-SULFOXIDE REDUCTASE B1
Paelopatides15223-
Paelopatides15224CGI-121 FAMILY MEMBER
Paelopatides15225ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15226PROTEIN CBG26694
Paelopatides15227-
Paelopatides15228-
Paelopatides15229REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides15230ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15231REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides15232PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED
Paelopatides15233PROTEIN CBG26694
Paelopatides15234PROTEIN CBG26694
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