About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15113TRANSPOSABLE ELEMENT-RELATED
Paelopatides15114REVERSE TRANSCRIPTASE
Paelopatides15115GLUTATHIONE PEROXIDASE
Paelopatides15116-
Paelopatides15117-
Paelopatides15118MICROSOMAL TRIGLYCERIDE TRANSFER PROTEIN, LARGE SUBUNIT
Paelopatides15119TRNA (GUANINE-9-) METHYLTRANSFERASE
Paelopatides15120-
Paelopatides15121THYMUS, BRAIN AND TESTES-ASSOCIATED
Paelopatides15122TRANSPOSON
Paelopatides15123GLUTATHIONE PEROXIDASE
Paelopatides15124SYNAPTOTAGMIN
Paelopatides15125-
Paelopatides15126PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides15127RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides15128-
Paelopatides15129-
Paelopatides15130ENZYMATIC POLYPROTEIN-RELATED
Paelopatides15131ENDONUCLEASE-RELATED
Paelopatides15132PROTEIN CBG26694
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