About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16251TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides16252POL PROTEIN
Paelopatides16253ENDONUCLEASE-RELATED
Paelopatides16254PROTEIN CBG26694
Paelopatides16255-
Paelopatides16256-
Paelopatides16257-
Paelopatides16258NITRIC OXIDE SYNTHASE-RELATED
Paelopatides16259-
Paelopatides16260PROTEIN CBG26694
Paelopatides16261THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
Paelopatides16262-
Paelopatides16265ENDONUCLEASE-RELATED
Paelopatides16266ENDONUCLEASE-RELATED
Paelopatides16267FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16268FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16269TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP
Paelopatides16270PROTEIN CBG26694
Paelopatides16271REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16272-
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