About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16148GLUTAMINE-TRNA LIGASE
Paelopatides16149NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides16151-
Paelopatides16152NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B
Paelopatides16153SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides16154RETROTRANSPOSON
Paelopatides16155OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides16156PARANEOPLASTIC ANTIGEN
Paelopatides16157POL PROTEIN
Paelopatides16158-
Paelopatides16159-
Paelopatides16160-
Paelopatides16161BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides16162F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16163DNAJ HOMOLOG SUBFAMILY C MEMBER 24
Paelopatides16164-
Paelopatides16165PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides16166DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides16167FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides16168-
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