About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16124GTP-BINDING
Paelopatides16125TYROSINE-PROTEIN KINASE
Paelopatides16126REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16127TETRATRICOPEPTIDE REPEAT PROTEIN 22
Paelopatides16128-
Paelopatides16130TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides16131-
Paelopatides16132EPM2A-INTERACTING PROTEIN 1
Paelopatides16133EPOXIDE HYDROLASE
Paelopatides16137CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16138PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides16139TRANSPOSABLE ELEMENT-RELATED
Paelopatides16140CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16141NOTCH LIGAND FAMILY MEMBER
Paelopatides1614230S 40S RIBOSOMAL PROTEIN
Paelopatides16143-
Paelopatides16144-
Paelopatides16145OS05G0310600 PROTEIN
Paelopatides16146-
Paelopatides16147-
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