About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides1616940S RIBOSOMAL PROTEIN S3A
Paelopatides16170NEURALIZED
Paelopatides16171PROTEIN CBG26694
Paelopatides16172AMINO ACID TRANSPORTER
Paelopatides16173ENDOSOME-ASSOCIATED TRAFFICKING REGULATOR 1
Paelopatides16174-
Paelopatides16175-
Paelopatides16176-
Paelopatides16177-
Paelopatides16178-
Paelopatides16179STEROL DESATURASE
Paelopatides16180-
Paelopatides16181SIALATE O-ACETYLESTERASE
Paelopatides16182OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides16183-
Paelopatides16184GH04784P
Paelopatides16185COUNTIN RECEPTOR CNR3-RELATED
Paelopatides16186FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16187CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16188CXC DOMAIN-CONTAINING PROTEIN-RELATED
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