About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16383-
Paelopatides16384-
Paelopatides16385ZINC FINGER MATRIN-TYPE PROTEIN 3
Paelopatides16386PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides16387ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16388-
Paelopatides16389PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides16390REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16391REVERSE TRANSCRIPTASES
Paelopatides16392REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16393-
Paelopatides16394PROTEIN DISPATCHED-RELATED
Paelopatides16395-
Paelopatides16396FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16397FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16398ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16399PROTEIN CBG26694
Paelopatides16400ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides16401-
Paelopatides16402REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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