About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18160CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18161ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18162POL PROTEIN
Paelopatides18163-
Paelopatides18164-
Paelopatides18165PROTEIN CBG26694
Paelopatides18166PROTEIN CBG26694
Paelopatides18167PROTEIN CBG26694
Paelopatides18168PROGRAMMED CELL DEATH PROTEIN 5
Paelopatides18169EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
Paelopatides18170TRNA-SPECIFIC ADENOSINE DEAMINASE 1
Paelopatides18171CHST5 PROTEIN
Paelopatides18172-
Paelopatides18173REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18174METHYLTRANSFERASE
Paelopatides18176-
Paelopatides18177GEO11136P1-RELATED
Paelopatides18178GEO11136P1-RELATED
Paelopatides18179ENDONUCLEASE-RELATED
Paelopatides18180GEO11136P1-RELATED
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