About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18201-
Paelopatides18202REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18203CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18204-
Paelopatides18205-
Paelopatides18206RNA-BINDING PROTEIN RELATED
Paelopatides18207REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18217-
Paelopatides18218REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18219AP ENDONUCLEASE
Paelopatides18220AP ENDONUCLEASE
Paelopatides18221UNCHARACTERIZED
Paelopatides18222E3 UBIQUITIN-PROTEIN LIGASE UBR4
Paelopatides18223E3 UBIQUITIN-PROTEIN LIGASE UBR4
Paelopatides18224UNCHARACTERIZED
Paelopatides18225PROTEIN CBG26694
Paelopatides18226PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18227-
Paelopatides18228ENDONUCLEASE-RELATED
Paelopatides18229ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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