About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18181-
Paelopatides18182-
Paelopatides18183PROTEIN CBG26694
Paelopatides18184ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18185NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides18186-
Paelopatides18187RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides18188NETRIN RECEPTOR UNC5
Paelopatides18189ACETYLCHOLINESTERASE
Paelopatides18190CARBOXYLESTERASE
Paelopatides18191TRANSPOSON
Paelopatides18192-
Paelopatides18193-
Paelopatides18194REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18195GAMETOCYTOGENESIS-IMPLICATED PROTEIN
Paelopatides18196ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18197T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides18198POL PROTEIN
Paelopatides18199-
Paelopatides18200ENDONUCLEASE-RELATED
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