About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19132FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides19133INTEGRIN BETA SUBUNIT
Paelopatides19134ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19135ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides19136POL PROTEIN
Paelopatides19137-
Paelopatides19138PROTEIN CBG26694
Paelopatides19139TRANSPOSASE, PUTATIVE-RELATED
Paelopatides19140-
Paelopatides19141CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19142ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
Paelopatides19143ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
Paelopatides19144SERINE/THREONINE-PROTEIN KINASE PIM
Paelopatides19145SERINE/THREONINE-PROTEIN KINASE PIM
Paelopatides19146-
Paelopatides19147TRANSPOSABLE ELEMENT-RELATED
Paelopatides19148-
Paelopatides19149SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides19150REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19151KREMEN PROTEIN
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