About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19041-
Paelopatides19042-
Paelopatides19043-
Paelopatides19044-
Paelopatides19045-
Paelopatides19046-
Paelopatides19047MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides19048MULTICOPPER OXIDASE-RELATED
Paelopatides19049GAG-RELATED PROTEIN
Paelopatides19050DNA HELICASE RECQ FAMILY MEMBER
Paelopatides19051HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides19052CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19053CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19054ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides19055CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides19056ABHYDROLASE DOMAIN-CONTAINING PROTEIN
Paelopatides19057-
Paelopatides19058DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides19059-
Paelopatides19060REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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