About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19019-
Paelopatides19020REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides19021EXS-RELATED PROTEIN
Paelopatides19022-
Paelopatides19023JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
Paelopatides19024PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides19025-
Paelopatides19026DYNEIN INTERMEDIATE CHAIN
Paelopatides19027-
Paelopatides19028-
Paelopatides19029ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides19030AGAP009604-PA
Paelopatides19031-
Paelopatides19032-
Paelopatides19034SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides19035ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides19036ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides19038MUCIN-17
Paelopatides19039NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides19040POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
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