About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20816RETROTRANSPOSON
Paelopatides20817STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides20818ZINC FINGER PROTEIN 142
Paelopatides20819ZINC FINGER, ZZ TYPE
Paelopatides20820ZINC FINGER, ZZ TYPE
Paelopatides20821-
Paelopatides20822THYMIDINE PHOSPHORYLASE
Paelopatides20823-
Paelopatides20824-
Paelopatides20825AGAP003327-PA
Paelopatides20826AGAP003327-PA
Paelopatides20827AGAP003327-PA
Paelopatides20828-
Paelopatides20829AGAP003327-PA
Paelopatides20830LEUCINE ZIPPER PROTEIN 4-RELATED
Paelopatides20831POL PROTEIN
Paelopatides20832-
Paelopatides20833UNCHARACTERIZED
Paelopatides20834-
Paelopatides20835EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
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