About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20773HISTONE H4
Paelopatides20775-
Paelopatides20776ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
Paelopatides20777AP ENDONUCLEASE
Paelopatides20778CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20779SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20780SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20781-
Paelopatides20782N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides20783-
Paelopatides207846-PHOSPHOGLUCONATE DEHYDROGENASE
Paelopatides20786PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides20787RETROTRANSPOSON
Paelopatides20788-
Paelopatides20789-
Paelopatides20790EPM2A-INTERACTING PROTEIN 1
Paelopatides20791RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides20792FURRY-RELATED
Paelopatides20793ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides20794-
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