About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21570ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides21571ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides21572PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides21573MACPF DOMAIN-CONTAINING PROTEIN
Paelopatides21574-
Paelopatides21575-
Paelopatides21576-
Paelopatides21577NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides21578PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides21579-
Paelopatides21580ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21581SCD6 PROTEIN-RELATED
Paelopatides21582EXOSOME COMPLEX COMPONENT
Paelopatides21583ZINC FINGER HOMEOBOX PROTEIN
Paelopatides21584ZINC FINGER HOMEOBOX PROTEIN
Paelopatides21585ZINC FINGER HOMEOBOX PROTEIN
Paelopatides21586PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides21587-
Paelopatides21588RABPHILIN, ISOFORM A
Paelopatides21589RABPHILIN, ISOFORM A
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