About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22448-
Paelopatides22449PROTEIN CBG26694
Paelopatides22450-
Paelopatides22451NUDIX HYDROLASE, NUDC SUBFAMILY
Paelopatides22452ENDONUCLEASE
Paelopatides22453-
Paelopatides22454EPM2A-INTERACTING PROTEIN 1
Paelopatides22455ACETYLCHOLINESTERASE
Paelopatides2245652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides22457ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22458ANGIOTENSIN-CONVERTING ENZYME
Paelopatides22459LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
Paelopatides22460LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
Paelopatides22461TYROSINASE FAMILY MEMBER
Paelopatides22462S-ANTIGEN PROTEIN
Paelopatides22463UNCHARACTERIZED
Paelopatides22464-
Paelopatides22465REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22468HISTONE H3
Paelopatides22469-
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