About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22315ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
Paelopatides22316P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN
Paelopatides22317ACTIN
Paelopatides22318ACTIN
Paelopatides22319ACTIN
Paelopatides22320NOTCH LIGAND FAMILY MEMBER
Paelopatides22321-
Paelopatides22322-
Paelopatides22323REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22324BUCENTAUR RELATED
Paelopatides22325VACUOLAR PROTON ATPASES
Paelopatides22326PUTATIVE-RELATED
Paelopatides22327-
Paelopatides22328PROTEIN CBG26694
Paelopatides22329EXPRESSED PROTEIN
Paelopatides22330-
Paelopatides22331-
Paelopatides22332-
Paelopatides22333UNCHARACTERIZED
Paelopatides22334PUTATIVE ATP-ASE
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